Big-Lipped Alligator Moment: the full Tokyo Mew Mew cast was introduced in the first chapter, but Ichigo and Otachi had to later find them again. This crosses over with Fridge Logic in some aspects.
Chapter 41 is chock full of it between Ciel and Masaya, of all people. For example:
Ichigo, Aoyama, and Ciel are all on a date.
"Aoyama saisd "hi" and ciel blushed and said "what?""
For some reason Ciel seems really... nervous around Masaya for no explainable reason.
Ciel turns into a tsundere around Masaya, saying things like "I didn't do it to help you. Its not like were friends or anything" and when Masaya asks why he's smiling, he screams "NOT BECAUSE OF YOU". Granted it wasn't because of him, but still.. defensive much, Ciel?
When Ichigo dissapears from the date suddenly, Ciel says to Aoyama, "oh god we are not on a date so you better go find your real date cuz this isn't going to work" and he feels "weird".
Tony and Winthorpe are gay/bi for Ciel, and a lot of queer things seem to happen between them.
Ciel begrudgingly giving Tony his jacket because he's cold... not to mention the cliche BL scene of two guys alone in a classroom together.
Tony telling Ciel his long hair is cute, and later asking if he has a girlfriend, then laughing nervously and saying "who needs girls?"
Ciel constantly thinking of Tony or complaining about him, mixed with the frequent utterances of his name may count.
Ciel telling Tony "i am hard for you", though it seems to be accidental.
Another cliche scene where Tony asks Ciel to meet him on the roof of the school. He also gets close to his face, though it's really only to see what's under his eyepatch.
When Ciel is made to pretend to be a girl at a previously all-boys school, chaos ensues.. in the form of Ho Yay.
Boys stare and whistle at Ciel (or at his.. skirt).
Ciel getting an upskirt and Winthorpe looking, complimenting Ciel's legs, then asking if he has a boyfriend.
Tony said "he is my girlfriend" ... Winthorpe said "so I guess this makes you my rival in love" ... And winthorpe "ok cool. Don't worry lovely ciel I will win your heart"
and winthorpe smiled and said "you're so cute" and Cielsaid "AFGHH!"
In chapter 59, Winthorpe rationalizing how a relationship with him and Ciel could work when Ciel tries to point out the flaws.
And winthorpe said "its ok I like him before I knew he was a boy" And tony said "but he I like him first hes my best friend!"
Winthorpe having a much more lustful and perverted crush on Ciel.
A chapter dedicated to Winthorpe kidnapping and molesting Ciel.
Vlad hitting on Tony and hypnotizing him into thinking they're a couple.
Memetic Mutation: "Mint moved beautiful from her ballet did help."
Tear Jerker: When Nhu's brother Tieu finally dies after getting more and more ill, leaving Nhu all alone.
The Scrappy: Somewhat Pudding and definitely Zakuro.
WTH, Costuming Department?: Among many odd outfits, one that's particularly odd (even questioned in the story) is Mint's 'beach' outfit in chapter 5. She wears a skimpy navy two-piece... underneath a giant blue ball gown with bows all over it, which her dog has a matching bow to. Some other odd choices include:
Zakuro's space outfit, which seems like it would be completely useless in space.
Otachi's cafe uniform, which is black with gold and red trim, chains, combat boots, martial arts gloves (not pictured), and a flame design on the sleeves. The cafe he's working at? Cafe Mew Mew, the girliest, pinkest cafe to ever exist, which previously had an all female waitress staff who wore bright, colorful, and frilly maid uniforms.
Many of Otachi's outfits are impractical for fighting, but the strangest one was when he and Ichigo were sneaking around to find Mint in chapter 3. She had a black cat suit, sure, but he had a black wolf suit with finger-less gloves, red lining (which won't help you blend in), and CHAINS. Chains are too noisy to sneak around with.