Also done InUniverse by Synergy; she thinks that Lyra is the actual Big Bad, acting like she's evil, when the only thing she tries to do is her job.
Web Comic:
Moment of Awesome: When Graham tries to take Doctor with him by force Doc just sit's there without flinching as several gun turrets suddenly pop up behind him.
Doctor: "Go ahead. Try me. Graham, I was wondering which one's faster, your assistant, Shao, your droids, or these R63 - Breach Turret I borrowed from the Ganymedes?"