Copyright screen now displays "2016: TPP" above the Game Freak and Nintendo credits. (though no copyright symbol, due to the project's status as a derivative work)
Title screen altered.
Dialogue altered.
On the start of a new game, there is a new prologue segment where the game begins in Kanto, ala Red, Green, Blue, & Yellow, following the path of those games up until the S.S. Anne is boarded. Team Rocket hijacks the boat, only for it to crash. The game then starts in Johto as per usual.
A special event character, Burglar Simon, has been added and appears throughout the game.
Event flags and sequences have been altered. For example, Pryce's gym in Mahogany Town is now the intended 5th Gym in Johto, and the Team Rocket subplot occurs by that point to enforce it.
The Kanto Rival is now the true Champion after Lance, in a similar manner to Red, Green, Blue, and Yellow.
Several new areas have been added to Kanto and post-game.
Certain areas usually have changes ported over from the Gen IV remakes HeartGold & SoulSilver. This includes BGM changes and map layout changes.
Experience point gains are now identical to Gen VI standards. All Pokemon who participate in battle gain the same EXP.
HM and TM distribution has been modified in accordance with the remakes and Gen VI.
Physical/Special split added.
New moves from Gen III and onward have been added, reusing older move animations.
Sound Test added for both sound effects and music.
Ability to switch between the original, slow HP bar drain rate, which is a bug, or a more "proper" fast one, which is how the HP bar was meant to operate and how it performs from Gen III onwards.
List of Additional Music and Areas in this ROMhack
Title Screen: Title Screen (Twitch Plays Pokemon Crystal Anniversary Remix)
Composers: Junichi Masuda, Go Ichinose
Arranger: pigdevil2010
Welcome to the World of Pokemon!/Route 24 & 25 (Nugget Bridge): Route 24 (GB Sounds Version) from Pokemon HeartGold & SoulSilver
Final Battle! (Professor Elm): Pokemon World Championships Final (GB Sounds Remix) originally from Pokemon Black & White (Remix of Battle! Champion—Kanto Version) from Pokemon Red, Green, Blue, & Yellow)
Location: Mt. Nightmare (After obtaining all 16 badges, use the bed in the old house in Pallet Town to heal, and the Nightmare sequence will be unlocked)
Battle BGM: Pokemon World Championships Final (GB Sounds Remix)
Gym Leader Rematch Info - Hard Mode
Falkner
Condition: Catch Articuno, Zapdos, and Moltres.
Change: Now owns Articuno, Zapdos, and Moltres.
Reward: None
Bugsy
Condition: Win first place in the Bug-Catching Contest.
Change: None
Reward: None
Whitney
Condition: None
Change: None
Reward: None
Morty
Condition: Catch Raikou, Entei, and Suicune. Once all three are caught, talk to Morty again to trigger Ho-Oh's appearance, then catch Ho-Oh as well.
Change: Gym is now larger, with an even bigger invisible floor puzzle. Morty's team is now primarily Dark-type.
Reward: Unknown
Pryce
Condition: None
Change: Challenges you at the front of the Gym, without the need for undergoing the ice puzzle. Now owns an Articuno.
Reward: Silver Wing
Chuck
Condition: Defeat Blackbelt Kiyo at Mt. Mortar.
Change: None
Reward: None
Jasmine
Condition: None
Change: All of the Pokemon on her team are nicknamed.
Reward: None
Clair
Condition: Defeat Silver at the Pokemon League.
Change: Instead of battling in her own Gym, she challenges the player in the Dragon's Den.
Reward: None
Brock
Condition: Collect all 3 fossils (Helix Fossil, Dome Fossil, and Old Amber).
Change: None
Reward: None
Misty
Condition: None
Change: Now owns a Suicune.
Reward: None
Lt. Surge
Condition: None
Change: Gym puzzle changed from finding two switches inside of garbage bins to a switch-based puzzle similar to Wattson's gym puzzle. Now owns a Raikou.
Reward: None
Erika
Condition: Capture Celebi.
Change: Now owns a Celebi.
Reward: None
Sabrina
Condition: Defeat BABA on Mt. Nightmare.
Change: Gym puzzle changed from several rooms with trainers and teleporters to one big central room with several teleporters, acting as a maze. Now owns a Mew.
Reward: None
Janine
Condition: None
Change: She and all of the trainers in her Gym are now invisible.
Reward: None
Blaine
Condition: Find and return Blaine's Research Notes to him.