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Season 1
- Transform and Roll Out (Three-Episode Pilot): After a battle in deep space, Optimus Prime and his crew of Autobots end up on a strange new world - Earth.
- Home Is Where The Spark Is: Sari helps the Autobots settle into their new base only to find the plant’s machinery has a mind of its own.
- Total Meltdown: Inventor Prometheus Black develops a chemical that can eat through even Autobot metal, and decides to go after Professor Sumdac with it.
- Blast from the Past: Bulkhead tries to hone his skills into a more precise manner of fighting, only to be needed when a trio of animatronics are transformed into the mighty Dinobots.
- The Thrill of the Hunt: Ratchet flashes back to his tour of duty in the Great War as the Autobots chase after a mysterious muscle car in Detroit.
- Nanosec: Criminal Nino Sexton uses a suit that grants him super speed to commit a heist that endangers all of Detroit.
- Along Came a Spider: On the Autobots’ first Halloween, Optimus is confronted with a face from his past.
- Sound and Fury: Bulkhead tries to find a good birthday present for Sari, only to be upstaged by her mysterious Sound Wave toy.
- Lost and Found: When the Decepticons Lugnut and Blitzwing arrive on Earth, the Autobots decide to pack up and leave to keep the AllSpark safe.
- Survival of the Fittest: Prowl and Fanzone team up to find Sari after she is kidnapped by the Dinobots.
- Headmaster: A disgruntled fired Sumdac Systems employee takes control of Bulkhead’s body to take revenge on Sumdac.
- Nature Calls: Prowl, Bumblebee, and Sari’s camping trip is ruined when they find themselves hunted by a monster in the woods.
- Megatron Rising, Part I: Optimus questions his leadership abilities in the face of an imminent Decepticon attack.
- Megatron Rising, Part II: The Autobots do battle with the repaired Megatron and his army.
Season 2
- The Elite Guard: The Autobot Elite Guard arrives on Earth to dress down Optimus’s team about recent events.
- The Return of the Headmaster: Sentinel Prime is forced to ask Optimus for help when his body is taken by Henry Masterson.
- Mission Accomplished: Ultra Magnus prepares to forcibly remove Optimus’s team from Earth at the same time Starscream hatches a scheme to get the Autobots and Megatron alike.
- Garbage In, Garbage Out: Ratchet contends with an incredibly naive Transformer named Wreck-Gar who has just been brought to life by an AllSpark fragment.
- Velocity: Bumblebee and Sari join an underground race on the trail of another fragment.
- Rise of the Constructicons: Bulkhead befriends two crass construction vehicles brought to life by fragments.
- A Fistful of Energon: Prowl teams up with Lockdown to pursue the recently escaped Starscream.
- SUV: Society of Ultimate Villainy: Detroit’s B-level villains form an alliance with a mysterious benefactor in a bid to take control of Detroit.
- Autoboot Camp: Bumblebee thinks back to when he investigated a mole in the Autobot ranks back in boot camp on Cybertron.
- Black Friday: Optimus and Grimlock are forced to team up against Blackarachnia and Meltdown.
- Sari, No One's Home: While the Autobots battle Blitzwing, Sari is left home alone to fend off the Constructicons.
- A Bridge Too Close, Part I: Megatron kidnaps Bulkhead to help complete construction on his space bridge.
- A Bridge Too Close, Part II: All-out war breaks out over Megatron’s space bridge.
Season 3
- TransWarped: In the aftermath of the battle at the mine, Sari and her father’s relationship takes a strange turn; meanwhile, the Autobots try to contact Cybertron, where an increasingly desperate Shockwave tries to cover his tracks while Megatron and Starscream discover a unique opportunity.
- Three's a Crowd: Bulkhead finds out the Constructicons have a new leader with big plans of his own.
- Where Is Thy Sting?: Bumblebee finds himself at the mercy of a crazed Wasp who has made his way to Earth for revenge.
- Five Servos of Doom: Prowl contends with his past during an investigation into Sentinel’s recent success capturing Decepticons.
- Predacons Rising: Wasp’s fate takes an even stranger turn as Optimus and Sentinel’s ages old feud reaches a boiling point.
- Human Error, Part I: The Autobots are not quite themselves on Christmas morning after receiving a Sound Wave toy.
- Human Error, Part II: Sari brings together a team of “Substitute Autobots” to free the crew from Soundwave’s control.
- Decepticon Air: The Decepticons aboard the Elite Guard flagship escape and seek revenge on their captors.
- This Is Why I Hate Machines: Ratchet and Fanzone find themselves warped to Cybertron just as the Decepticon-controlled Omega Supreme arrives in the skies.
- Endgame, Part I: Optimus reflects on his past, present, and future as Megatron prepares for an invasion of Detroit.
- Endgame, Part II: The Autobots fight Megatron’s new army in the final battle for Detroit, Earth, and their very lives.
Season 4
- The Trial of Megatron: In the unproduced Season 4 premiere, Megatron begins manipulating the events of his upcoming trial to his advantage while Sentinel fights to stay in power as Optimus’s team contends with their newfound fame.
Shorts
- Career Day: Optimus finds speaking at an elementary school’s career day is harder than he thought.
- Starscream Heckles Megatron (aka "Mocking Megatron"): Starscream comes to regret heckling Megatron during a speech.
- Mime Time (aka "Bumblebee"): Bumblebee and Bulkhead are confused when Sari shows them the wonders of a mime.
- Catch (aka "Bulkhead Plays with Grimlock"): Grimlock plays the all-important game of fetch with Bulkhead.
- Evel Knievel Jump (aka "Prowl"): Prowl tries to perform a fantastic daredevil jump.
- Operating Table (aka "Ratchet Performs Surgery on Bulkhead"): Ratchet works repairs on Bulkhead with questionable results.
- Explosive Fist (aka "Explosive Punch"): Lugnut uses his POKE to dig a massive hole at Blitzwing’s request.
- Meet Bulkhead
- Meet Ratchet
- Meet Bumblebee
- Meet Optimus Prime
- Meet Prowl
- Meet Megatron
- Meet Starscream