SciLab has developed the vaccine chip for Navis tainted by Nebula's dark chips. The first step is to restore Proto Man.
- He's Back!: As the title suggests, Proto Man is cured of the dark chip's corruption and back to normal.
- "I Know You're in There Somewhere" Fight: Exaggerated. Chaud cross fuses with Dark Proto Man to knock some sense into him on the inside.
- Parental Substitute: Its unspoken, but there's a memory of a young Chaud attending his mother's funeral, and meeting Proto Man the next day.